CVPR 2025 Open Access Repository

Workshop on Computer Vision for Microscopy Image Analysis

SAM4EM: Efficient memory-based two stage prompt-free segment anything model adapter for complex 3D neuroscience electron microscopy stacks: Uzair Shah,

Marco Agus,

Daniya Boges,

Vanessa Chiappini,

Mahmood Alzubaidi,

Jens Schneider,

Markus Hadwiger,

Pierre J. Magistretti,

Mowafa Househ,

Corrado Calì; [pdf] [supp] [arXiv]
[bibtex]
@InProceedings{Shah_2025_CVPR, author = {Shah, Uzair and Agus, Marco and Boges, Daniya and Chiappini, Vanessa and Alzubaidi, Mahmood and Schneider, Jens and Hadwiger, Markus and Magistretti, Pierre J. and Househ, Mowafa and Cal{\`\i}, Corrado}, title = {SAM4EM: Efficient memory-based two stage prompt-free segment anything model adapter for complex 3D neuroscience electron microscopy stacks}, booktitle = {Proceedings of the Computer Vision and Pattern Recognition Conference (CVPR) Workshops}, month = {June}, year = {2025}, pages = {4678-4687} }
IAUNet: Instance-Aware U-Net: Yaroslav Prytula,

Illia Tsiporenko,

Ali Zeynalli,

Dmytro Fishman; [pdf] [supp]
[bibtex]
@InProceedings{Prytula_2025_CVPR, author = {Prytula, Yaroslav and Tsiporenko, Illia and Zeynalli, Ali and Fishman, Dmytro}, title = {IAUNet: Instance-Aware U-Net}, booktitle = {Proceedings of the Computer Vision and Pattern Recognition Conference (CVPR) Workshops}, month = {June}, year = {2025}, pages = {4739-4748} }
Fast Sphericity and Roundness approximation in 2D and 3D using Local Thickness: Pawel Tomasz Pieta,

Peter Winkel Rasmussen,

Anders Bjorholm Dahl,

Anders Nymark Christensen; [pdf]
[bibtex]
@InProceedings{Pieta_2025_CVPR, author = {Pieta, Pawel Tomasz and Rasmussen, Peter Winkel and Dahl, Anders Bjorholm and Christensen, Anders Nymark}, title = {Fast Sphericity and Roundness approximation in 2D and 3D using Local Thickness}, booktitle = {Proceedings of the Computer Vision and Pattern Recognition Conference (CVPR) Workshops}, month = {June}, year = {2025}, pages = {4667-4677} }
Generalizable Unsupervised Microscopy Video Denoising via Weighted SpatioTemporal Sampling: Mary Aiyetigbo,

Wanqi Yuan,

Feng Luo,

Xin Li,

Tong Ye,

Nianyi Li; [pdf]
[bibtex]
@InProceedings{Aiyetigbo_2025_CVPR, author = {Aiyetigbo, Mary and Yuan, Wanqi and Luo, Feng and Li, Xin and Ye, Tong and Li, Nianyi}, title = {Generalizable Unsupervised Microscopy Video Denoising via Weighted SpatioTemporal Sampling}, booktitle = {Proceedings of the Computer Vision and Pattern Recognition Conference (CVPR) Workshops}, month = {June}, year = {2025}, pages = {4709-4718} }
Prompt-Tuning SAM: From Generalist to Specialist with only 2048 Parameters and 16 Training Images: Tristan Piater,

Björn Barz,

Alexander Freytag; [pdf] [arXiv]
[bibtex]
@InProceedings{Piater_2025_CVPR, author = {Piater, Tristan and Barz, Bj\"orn and Freytag, Alexander}, title = {Prompt-Tuning SAM: From Generalist to Specialist with only 2048 Parameters and 16 Training Images}, booktitle = {Proceedings of the Computer Vision and Pattern Recognition Conference (CVPR) Workshops}, month = {June}, year = {2025}, pages = {4688-4698} }
Zero-Shot Denoising for Fluorescence Lifetime Imaging Microscopy with Intensity-Guided Learning: Hao Chen,

Julian Najera,

Dagmawit Geresu,

Meenal Datta,

Cody Smith,

Scott Howard; [pdf] [arXiv]
[bibtex]
@InProceedings{Chen_2025_CVPR, author = {Chen, Hao and Najera, Julian and Geresu, Dagmawit and Datta, Meenal and Smith, Cody and Howard, Scott}, title = {Zero-Shot Denoising for Fluorescence Lifetime Imaging Microscopy with Intensity-Guided Learning}, booktitle = {Proceedings of the Computer Vision and Pattern Recognition Conference (CVPR) Workshops}, month = {June}, year = {2025}, pages = {4719-4728} }
A Novel 3D Decoder with Weighted and Learnable Triple Attention for 3D Microscopy Image Segmentation: Siyavash Shabani,

Sahar Mohammed,

Bahram Parvin; [pdf]
[bibtex]
@InProceedings{Shabani_2025_CVPR, author = {Shabani, Siyavash and Mohammed, Sahar and Parvin, Bahram}, title = {A Novel 3D Decoder with Weighted and Learnable Triple Attention for 3D Microscopy Image Segmentation}, booktitle = {Proceedings of the Computer Vision and Pattern Recognition Conference (CVPR) Workshops}, month = {June}, year = {2025}, pages = {4699-4708} }
Low-Frame-Rate Cell Tracking: Unmet Needs and Future Directions: Mina Gachloo,

Akhila Nangineedi,

Mahsa Partovi,

Fardifa Fathmiul Alam,

Tzu-Yu Chu,

James Schvaneveldt,

Xiaoming Lu,

Tirthankar Biswas,

Marc Russel Birtwistle,

Federico Iuricich; [pdf]
[bibtex]
@InProceedings{Gachloo_2025_CVPR, author = {Gachloo, Mina and Nangineedi, Akhila and Partovi, Mahsa and Alam, Fardifa Fathmiul and Chu, Tzu-Yu and Schvaneveldt, James and Lu, Xiaoming and Biswas, Tirthankar and Birtwistle, Marc Russel and Iuricich, Federico}, title = {Low-Frame-Rate Cell Tracking: Unmet Needs and Future Directions}, booktitle = {Proceedings of the Computer Vision and Pattern Recognition Conference (CVPR) Workshops}, month = {June}, year = {2025}, pages = {4729-4738} }
CytoFM: The first cytology foundation model: Vedrana Ivezic,

Ashwath Radhachandran,

Ekaterina Redekop,

Shreeram Athreya,

Dongwoo Lee,

Vivek Sant,

Corey Arnold,

William Speier; [pdf] [arXiv]
[bibtex]
@InProceedings{Ivezic_2025_CVPR, author = {Ivezic, Vedrana and Radhachandran, Ashwath and Redekop, Ekaterina and Athreya, Shreeram and Lee, Dongwoo and Sant, Vivek and Arnold, Corey and Speier, William}, title = {CytoFM: The first cytology foundation model}, booktitle = {Proceedings of the Computer Vision and Pattern Recognition Conference (CVPR) Workshops}, month = {June}, year = {2025}, pages = {4749-4757} }
Beyond Neurofibrillary Tangles: Explainable AI for Microscopic Tauopathy Classification in Immunofluorescence Imaging: Jesus Dassaef López-Barrios,

Miguel Angel Ontiveros-Torres,

Jose Antonio Cantoral-Ceballos; [pdf]
[bibtex]
@InProceedings{Lopez-Barrios_2025_CVPR, author = {L\'opez-Barrios, Jesus Dassaef and Ontiveros-Torres, Miguel Angel and Cantoral-Ceballos, Jose Antonio}, title = {Beyond Neurofibrillary Tangles: Explainable AI for Microscopic Tauopathy Classification in Immunofluorescence Imaging}, booktitle = {Proceedings of the Computer Vision and Pattern Recognition Conference (CVPR) Workshops}, month = {June}, year = {2025}, pages = {4758-4768} }