Computer Vision for Microscopy Image Analysis

CNN Based Yeast Cell Segmentation in Multi-Modal Fluorescent Microscopy Data

Ali Selman Aydin,

Abhinandan Dubey,

Daniel Dovrat,

Amir Aharoni,

Roy Shilkrot

[pdf]

[bibtex]

@InProceedings{Aydin_2017_CVPR_Workshops,
author = {Selman Aydin, Ali and Dubey, Abhinandan and Dovrat, Daniel and Aharoni, Amir and Shilkrot, Roy},
title = {CNN Based Yeast Cell Segmentation in Multi-Modal Fluorescent Microscopy Data},
booktitle = {Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {July},
year = {2017}
}

Classification and Retrieval of Digital Pathology Scans: A New Dataset

Morteza Babaie,

Shivam Kalra,

Aditya Sriram,

Christopher Mitcheltree,

Shujin Zhu,

Amin Khatami,

Shahryar Rahnamayan,

Hamid R. Tizhoosh

[pdf] [arXiv]

[bibtex]

@InProceedings{Babaie_2017_CVPR_Workshops,
author = {Babaie, Morteza and Kalra, Shivam and Sriram, Aditya and Mitcheltree, Christopher and Zhu, Shujin and Khatami, Amin and Rahnamayan, Shahryar and Tizhoosh, Hamid R.},
title = {Classification and Retrieval of Digital Pathology Scans: A New Dataset},
booktitle = {Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {July},
year = {2017}
}

Breast Cancer Histopathological Image Classification: Is Magnification Important?

Vibha Gupta,

Arnav Bhavsar

[pdf]

[bibtex]

@InProceedings{Gupta_2017_CVPR_Workshops,
author = {Gupta, Vibha and Bhavsar, Arnav},
title = {Breast Cancer Histopathological Image Classification: Is Magnification Important?},
booktitle = {Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {July},
year = {2017}
}

Delineation of Skin Strata in Reflectance Confocal Microscopy Images With Recurrent Convolutional Networks

Alican Bozkurt,

Trevor Gale,

Kivanc Kose,

Christi Alessi-Fox,

Dana H. Brooks,

Milind Rajadhyaksha,

Jennifer Dy

[pdf]

[bibtex]

@InProceedings{Bozkurt_2017_CVPR_Workshops,
author = {Bozkurt, Alican and Gale, Trevor and Kose, Kivanc and Alessi-Fox, Christi and Brooks, Dana H. and Rajadhyaksha, Milind and Dy, Jennifer},
title = {Delineation of Skin Strata in Reflectance Confocal Microscopy Images With Recurrent Convolutional Networks},
booktitle = {Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {July},
year = {2017}
}

Crowdsourcing for Chromosome Segmentation and Deep Classification

Monika Sharma,

Oindrila Saha,

Anand Sriraman,

Ramya Hebbalaguppe,

Lovekesh Vig,

Shirish Karande

[pdf]

[bibtex]

@InProceedings{Sharma_2017_CVPR_Workshops,
author = {Sharma, Monika and Saha, Oindrila and Sriraman, Anand and Hebbalaguppe, Ramya and Vig, Lovekesh and Karande, Shirish},
title = {Crowdsourcing for Chromosome Segmentation and Deep Classification},
booktitle = {Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {July},
year = {2017}
}

Generative Adversarial Learning for Reducing Manual Annotation in Semantic Segmentation on Large Scale Miscroscopy Images: Automated Vessel Segmentation in Retinal Fundus Image as Test Case

Avisek Lahiri,

Kumar Ayush,

Prabir Kumar Biswas,

Pabitra Mitra

[pdf]

[bibtex]

@InProceedings{Lahiri_2017_CVPR_Workshops,
author = {Lahiri, Avisek and Ayush, Kumar and Kumar Biswas, Prabir and Mitra, Pabitra},
title = {Generative Adversarial Learning for Reducing Manual Annotation in Semantic Segmentation on Large Scale Miscroscopy Images: Automated Vessel Segmentation in Retinal Fundus Image as Test Case},
booktitle = {Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {July},
year = {2017}
}

Microscopic Blood Smear Segmentation and Classification Using Deep Contour Aware CNN and Extreme Machine Learning

Muhammad Imran Razzak,

Saeeda Naz

[pdf]

[bibtex]

@InProceedings{Razzak_2017_CVPR_Workshops,
author = {Imran Razzak, Muhammad and Naz, Saeeda},
title = {Microscopic Blood Smear Segmentation and Classification Using Deep Contour Aware CNN and Extreme Machine Learning},
booktitle = {Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {July},
year = {2017}
}

Applying Faster R-CNN for Object Detection on Malaria Images

Jane Hung,

Anne Carpenter

[pdf] [arXiv]

[bibtex]

@InProceedings{Hung_2017_CVPR_Workshops,
author = {Hung, Jane and Carpenter, Anne},
title = {Applying Faster R-CNN for Object Detection on Malaria Images},
booktitle = {Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {July},
year = {2017}
}

An Early Experience Toward Developing Computer Aided Diagnosis for Gram-Stained Smears Images

Johanna Carvajal,

Daniel F. Smith,

Kun Zhao,

Arnold Wiliem,

Paul Finucane,

Peter Hobson,

Anthony Jennings,

Rodney McDougall,

Brian Lovell

[pdf]

[bibtex]

@InProceedings{Carvajal_2017_CVPR_Workshops,
author = {Carvajal, Johanna and Smith, Daniel F. and Zhao, Kun and Wiliem, Arnold and Finucane, Paul and Hobson, Peter and Jennings, Anthony and McDougall, Rodney and Lovell, Brian},
title = {An Early Experience Toward Developing Computer Aided Diagnosis for Gram-Stained Smears Images},
booktitle = {Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {July},
year = {2017}
}

Looking Under the Hood: Deep Neural Network Visualization to Interpret Whole-Slide Image Analysis Outcomes for Colorectal Polyps

Bruno Korbar,

Andrea M. Olofson,

Allen P. Miraflor,

Catherine M. Nicka,

Matthew A. Suriawinata,

Lorenzo Torresani,

Arief A. Suriawinata,

Saeed Hassanpour

[pdf]

[bibtex]

@InProceedings{Korbar_2017_CVPR_Workshops,
author = {Korbar, Bruno and Olofson, Andrea M. and Miraflor, Allen P. and Nicka, Catherine M. and Suriawinata, Matthew A. and Torresani, Lorenzo and Suriawinata, Arief A. and Hassanpour, Saeed},
title = {Looking Under the Hood: Deep Neural Network Visualization to Interpret Whole-Slide Image Analysis Outcomes for Colorectal Polyps},
booktitle = {Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {July},
year = {2017}
}

High-Magnification Multi-Views Based Classification of Breast Fine Needle Aspiration Cytology Cell Samples Using Fusion of Decisions From Deep Convolutional Networks

Hrushikesh Garud,

S. P. K. Karri,

Debdoot Sheet,

Jyotirmoy Chatterjee,

Manjunatha Mahadevappa,

Ajoy K. Ray,

Arindam Ghosh,

Ashok K. Maity

[pdf]

[bibtex]

@InProceedings{Garud_2017_CVPR_Workshops,
author = {Garud, Hrushikesh and Karri, S. P. K. and Sheet, Debdoot and Chatterjee, Jyotirmoy and Mahadevappa, Manjunatha and Ray, Ajoy K. and Ghosh, Arindam and Maity, Ashok K.},
title = {High-Magnification Multi-Views Based Classification of Breast Fine Needle Aspiration Cytology Cell Samples Using Fusion of Decisions From Deep Convolutional Networks},
booktitle = {Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {July},
year = {2017}
}

Nuclei Segmentation of Fluorescence Microscopy Images Using Three Dimensional Convolutional Neural Networks

David Joon Ho,

Chichen Fu,

Paul Salama,

Kenneth W. Dunn,

Edward J. Delp

[pdf]

[bibtex]

@InProceedings{Ho_2017_CVPR_Workshops,
author = {Joon Ho, David and Fu, Chichen and Salama, Paul and Dunn, Kenneth W. and Delp, Edward J.},
title = {Nuclei Segmentation of Fluorescence Microscopy Images Using Three Dimensional Convolutional Neural Networks},
booktitle = {Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {July},
year = {2017}
}

DeepXScope: Segmenting Microscopy Images With a Deep Neural Network

Philip Saponaro,

Wayne Treible,

Abhishek Kolagunda,

Timothy Chaya,

Jeffrey Caplan,

Chandra Kambhamettu,

Randall Wisser

[pdf]

[bibtex]

@InProceedings{Saponaro_2017_CVPR_Workshops,
author = {Saponaro, Philip and Treible, Wayne and Kolagunda, Abhishek and Chaya, Timothy and Caplan, Jeffrey and Kambhamettu, Chandra and Wisser, Randall},
title = {DeepXScope: Segmenting Microscopy Images With a Deep Neural Network},
booktitle = {Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {July},
year = {2017}
}

Transferring Microscopy Image Modalities With Conditional Generative Adversarial Networks

Liang Han,

Zhaozheng Yin

[pdf]

[bibtex]

@InProceedings{Han_2017_CVPR_Workshops,
author = {Han, Liang and Yin, Zhaozheng},
title = {Transferring Microscopy Image Modalities With Conditional Generative Adversarial Networks},
booktitle = {Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {July},
year = {2017}
}

Fast Neural Cell Detection Using Light-Weight SSD Neural Network

Jingru Yi,

Pengxiang Wu,

Daniel J. Hoeppner,

Dimitris Metaxas

[pdf]

[bibtex]

@InProceedings{Yi_2017_CVPR_Workshops,
author = {Yi, Jingru and Wu, Pengxiang and Hoeppner, Daniel J. and Metaxas, Dimitris},
title = {Fast Neural Cell Detection Using Light-Weight SSD Neural Network},
booktitle = {Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {July},
year = {2017}
}

A Level Set Method for Gland Segmentation

Chen Wang,

Hong Bu,

Ji Bao,

Chunming Li

[pdf]

[bibtex]

@InProceedings{Wang_2017_CVPR_Workshops,
author = {Wang, Chen and Bu, Hong and Bao, Ji and Li, Chunming},
title = {A Level Set Method for Gland Segmentation},
booktitle = {Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {July},
year = {2017}
}