Computer Vision for Microscopy Image Analysis


Cell Image Segmentation by Integrating Multiple CNNs
Yuki Hiramatsu,
Kazuhiro Hotta,
Ayako Imanishi,
Michiyuki Matsuda,
Kenta Terai
[pdf]
[bibtex]
@InProceedings{Hiramatsu_2018_CVPR_Workshops,
author = {Hiramatsu, Yuki and Hotta, Kazuhiro and Imanishi, Ayako and Matsuda, Michiyuki and Terai, Kenta},
title = {Cell Image Segmentation by Integrating Multiple CNNs},
booktitle = {The IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2018}
}

Large Kernel Refine Fusion Net for Neuron Membrane Segmentation
Dongnan Liu,
Donghao Zhang,
Yang Song,
Chaoyi Zhang,
Heng Huang,
Mei Chen,
Weidong Cai
[pdf]
[bibtex]
@InProceedings{Liu_2018_CVPR_Workshops,
author = {Liu, Dongnan and Zhang, Donghao and Song, Yang and Zhang, Chaoyi and Huang, Heng and Chen, Mei and Cai, Weidong},
title = {Large Kernel Refine Fusion Net for Neuron Membrane Segmentation},
booktitle = {The IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2018}
}

Three Dimensional Fluorescence Microscopy Image Synthesis and Segmentation
Chichen Fu,
Soonam Lee,
David Joon Ho,
Shuo Han,
Paul Salama,
Kenneth W. Dunn,
Edward J. Delp
[pdf] [arXiv]
[bibtex]
@InProceedings{Fu_2018_CVPR_Workshops,
author = {Fu, Chichen and Lee, Soonam and Joon Ho, David and Han, Shuo and Salama, Paul and Dunn, Kenneth W. and Delp, Edward J.},
title = {Three Dimensional Fluorescence Microscopy Image Synthesis and Segmentation},
booktitle = {The IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2018}
}

Improved Extraction of Objects From Urine Microscopy Images With Unsupervised Thresholding and Supervised U-Net Techniques
Abdul Aziz,
Harshit Pande,
Bharath Cheluvaraju,
Tathagato Rai Dastidar
[pdf]
[bibtex]
@InProceedings{Aziz_2018_CVPR_Workshops,
author = {Aziz, Abdul and Pande, Harshit and Cheluvaraju, Bharath and Rai Dastidar, Tathagato},
title = {Improved Extraction of Objects From Urine Microscopy Images With Unsupervised Thresholding and Supervised U-Net Techniques},
booktitle = {The IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2018}
}

Multilayer Encoder-Decoder Network for 3D Nuclear Segmentation in Spheroid Models of Human Mammary Epithelial Cell Lines
Mina Khoshdeli,
Garrett Winkelmaier,
Bahram Parvin
[pdf]
[bibtex]
@InProceedings{Khoshdeli_2018_CVPR_Workshops,
author = {Khoshdeli, Mina and Winkelmaier, Garrett and Parvin, Bahram},
title = {Multilayer Encoder-Decoder Network for 3D Nuclear Segmentation in Spheroid Models of Human Mammary Epithelial Cell Lines},
booktitle = {The IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2018}
}

Resolution-Enhanced Lensless Color Shadow Imaging Microscopy Based on Large Field-of-View Submicron-Pixel Imaging Sensors
Cheng Yang,
Haowen Ma,
Xu Cao,
Xia Hua,
Xiaofeng Bu,
Limin Zhang,
Tao Yue,
Feng Yan
[pdf]
[bibtex]
@InProceedings{Yang_2018_CVPR_Workshops,
author = {Yang, Cheng and Ma, Haowen and Cao, Xu and Hua, Xia and Bu, Xiaofeng and Zhang, Limin and Yue, Tao and Yan, Feng},
title = {Resolution-Enhanced Lensless Color Shadow Imaging Microscopy Based on Large Field-of-View Submicron-Pixel Imaging Sensors},
booktitle = {The IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2018}
}

Sequential Modeling of Deep Features for Breast Cancer Histopathological Image Classification
Vibha Gupta,
Arnav Bhavsar
[pdf]
[bibtex]
@InProceedings{Gupta_2018_CVPR_Workshops,
author = {Gupta, Vibha and Bhavsar, Arnav},
title = {Sequential Modeling of Deep Features for Breast Cancer Histopathological Image Classification},
booktitle = {The IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2018}
}

Comparison of Deep Transfer Learning Strategies for Digital Pathology
Romain Mormont,
Pierre Geurts,
Raphael Maree
[pdf] [supp]
[bibtex]
@InProceedings{Mormont_2018_CVPR_Workshops,
author = {Mormont, Romain and Geurts, Pierre and Maree, Raphael},
title = {Comparison of Deep Transfer Learning Strategies for Digital Pathology},
booktitle = {The IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2018}
}

3D Cell Nuclear Morphology: Microscopy Imaging Dataset and Voxel-Based Morphometry Classification Results
Alexandr A. Kalinin,
Ari Allyn-Feuer,
Alex Ade,
Gordon-Victor Fon,
Walter Meixner,
David Dilworth,
Jeffrey R. de Wet,
Gerald A. Higgins,
Gen Zheng,
Amy Creekmore,
John W. Wiley,
James E. Verdone,
Robert W. Veltri,
Kenneth J. Pienta,
Donald S. Coffey,
Brian D. Athey,
Ivo D. Dinov
[pdf]
[bibtex]
@InProceedings{Kalinin_2018_CVPR_Workshops,
author = {Kalinin, Alexandr A. and Allyn-Feuer, Ari and Ade, Alex and Fon, Gordon-Victor and Meixner, Walter and Dilworth, David and de Wet, Jeffrey R. and Higgins, Gerald A. and Zheng, Gen and Creekmore, Amy and Wiley, John W. and Verdone, James E. and Veltri, Robert W. and Pienta, Kenneth J. and Coffey, Donald S. and Athey, Brian D. and Dinov, Ivo D.},
title = {3D Cell Nuclear Morphology: Microscopy Imaging Dataset and Voxel-Based Morphometry Classification Results},
booktitle = {The IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2018}
}

FastSME: Faster and Smoother Manifold Extraction From 3D Stack
Sreetama Basu,
Elton Rexhepaj,
Nathalie Spassky,
Auguste Genovesio,
Rasmus Reinhold Paulsen,
ASM Shihavuddin
[pdf]
[bibtex]
@InProceedings{Basu_2018_CVPR_Workshops,
author = {Basu, Sreetama and Rexhepaj, Elton and Spassky, Nathalie and Genovesio, Auguste and Reinhold Paulsen, Rasmus and Shihavuddin, ASM},
title = {FastSME: Faster and Smoother Manifold Extraction From 3D Stack},
booktitle = {The IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2018}
}

Localization and Tracking in 4D Fluorescence Microscopy Imagery
Shahira Abousamra,
Shai Adar,
Natalie Elia,
Roy Shilkrot
[pdf]
[bibtex]
@InProceedings{Abousamra_2018_CVPR_Workshops,
author = {Abousamra, Shahira and Adar, Shai and Elia, Natalie and Shilkrot, Roy},
title = {Localization and Tracking in 4D Fluorescence Microscopy Imagery},
booktitle = {The IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2018}
}

Estimation of Sperm Concentration and Total Motility From Microscopic Videos of Human Semen Samples
Karan Dewan,
Tathagato Rai Dastidar,
Maroof Ahmad
[pdf]
[bibtex]
@InProceedings{Dewan_2018_CVPR_Workshops,
author = {Dewan, Karan and Rai Dastidar, Tathagato and Ahmad, Maroof},
title = {Estimation of Sperm Concentration and Total Motility From Microscopic Videos of Human Semen Samples},
booktitle = {The IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2018}
}