BioImage Computing


SynapFlow: A Modular Framework Towards Large-Scale Analysis of Dendritic Spines
Pamela Osuna-Vargas,
Altug Kamacioglu,
Dominik F. Aschauer,
Petros E. Vlachos,
Sercan Alipek,
Jochen Triesch,
Simon Rumpel,
Matthias Kaschube
[pdf] [supp] [arXiv]
[bibtex]
@InProceedings{Osuna-Vargas_2025_ICCV, author = {Osuna-Vargas, Pamela and Kamacioglu, Altug and Aschauer, Dominik F. and Vlachos, Petros E. and Alipek, Sercan and Triesch, Jochen and Rumpel, Simon and Kaschube, Matthias}, title = {SynapFlow: A Modular Framework Towards Large-Scale Analysis of Dendritic Spines}, booktitle = {Proceedings of the IEEE/CVF International Conference on Computer Vision (ICCV) Workshops}, month = {October}, year = {2025}, pages = {5801-5811} }

An Investigation of Unsupervised Cell Tracking and Interactive Fine-Tuning
Manan Lalit,
Jan Funke
[pdf] [supp]
[bibtex]
@InProceedings{Lalit_2025_ICCV, author = {Lalit, Manan and Funke, Jan}, title = {An Investigation of Unsupervised Cell Tracking and Interactive Fine-Tuning}, booktitle = {Proceedings of the IEEE/CVF International Conference on Computer Vision (ICCV) Workshops}, month = {October}, year = {2025}, pages = {5792-5800} }

A comparison of data-driven shape quantification methods for 2D microscopy images
Anna Foix Romero,
Alexander Krull,
Virginie Uhlmann
[pdf]
[bibtex]
@InProceedings{Romero_2025_ICCV, author = {Romero, Anna Foix and Krull, Alexander and Uhlmann, Virginie}, title = {A comparison of data-driven shape quantification methods for 2D microscopy images}, booktitle = {Proceedings of the IEEE/CVF International Conference on Computer Vision (ICCV) Workshops}, month = {October}, year = {2025}, pages = {5741-5750} }

From Natural to Nanoscale: Training ControlNet on Scarce FIB-SEM Data for Augmenting Semantic Segmentation Data
Hannah Kniesel,
Pascal Rapp,
Pedro Hermosilla,
Timo Ropinski
[pdf]
[bibtex]
@InProceedings{Kniesel_2025_ICCV, author = {Kniesel, Hannah and Rapp, Pascal and Hermosilla, Pedro and Ropinski, Timo}, title = {From Natural to Nanoscale: Training ControlNet on Scarce FIB-SEM Data for Augmenting Semantic Segmentation Data}, booktitle = {Proceedings of the IEEE/CVF International Conference on Computer Vision (ICCV) Workshops}, month = {October}, year = {2025}, pages = {5731-5740} }

Preserving instance continuity and length in segmentation through connectivity-aware loss computation
Karol Szustakowski,
Luk Frank,
Julia Esser,
Jan Gründemann,
Marie Piraud
[pdf] [arXiv]
[bibtex]
@InProceedings{Szustakowski_2025_ICCV, author = {Szustakowski, Karol and Frank, Luk and Esser, Julia and Gr\"undemann, Jan and Piraud, Marie}, title = {Preserving instance continuity and length in segmentation through connectivity-aware loss computation}, booktitle = {Proceedings of the IEEE/CVF International Conference on Computer Vision (ICCV) Workshops}, month = {October}, year = {2025}, pages = {5782-5791} }

Topology-Preserving Image Segmentation with Spatial-Aware Persistent Feature Matching
Bo Wen,
Haochen Zhang,
Dirk-Uwe G Bartsch,
William Freeman,
Truong Nguyen,
Cheolhong An
[pdf] [supp] [arXiv]
[bibtex]
@InProceedings{Wen_2025_ICCV, author = {Wen, Bo and Zhang, Haochen and Bartsch, Dirk-Uwe G and Freeman, William and Nguyen, Truong and An, Cheolhong}, title = {Topology-Preserving Image Segmentation with Spatial-Aware Persistent Feature Matching}, booktitle = {Proceedings of the IEEE/CVF International Conference on Computer Vision (ICCV) Workshops}, month = {October}, year = {2025}, pages = {5762-5771} }

Probabilistic Domain Adaptation for Biomedical Image Segmentation
Anwai Archit,
Constantin Pape
[pdf] [supp] [arXiv]
[bibtex]
@InProceedings{Archit_2025_ICCV, author = {Archit, Anwai and Pape, Constantin}, title = {Probabilistic Domain Adaptation for Biomedical Image Segmentation}, booktitle = {Proceedings of the IEEE/CVF International Conference on Computer Vision (ICCV) Workshops}, month = {October}, year = {2025}, pages = {5722-5730} }

NeuReg: Domain-Invariant Brain Registration Across Species and Modalities
Taha Razzaq,
Asim Iqbal
[pdf]
[bibtex]
@InProceedings{Razzaq_2025_ICCV, author = {Razzaq, Taha and Iqbal, Asim}, title = {NeuReg: Domain-Invariant Brain Registration Across Species and Modalities}, booktitle = {Proceedings of the IEEE/CVF International Conference on Computer Vision (ICCV) Workshops}, month = {October}, year = {2025}, pages = {5751-5761} }

SelfAdapt: Unsupervised Domain Adaptation of Cell Segmentation Models
Fabian Hubert Reith,
Jannik Franzen,
Josef Lorenz Rumberger,
Dagmar Kainmueller
[pdf] [arXiv]
[bibtex]
@InProceedings{Reith_2025_ICCV, author = {Reith, Fabian Hubert and Franzen, Jannik and Rumberger, Josef Lorenz and Kainmueller, Dagmar}, title = {SelfAdapt: Unsupervised Domain Adaptation of Cell Segmentation Models}, booktitle = {Proceedings of the IEEE/CVF International Conference on Computer Vision (ICCV) Workshops}, month = {October}, year = {2025}, pages = {5812-5819} }

cubic: CUDA-accelerated 3D BioImage Computing
Alexandr A. Kalinin,
Anne E. Carpenter,
Shantanu Singh,
Matthew J. O'Meara
[pdf] [arXiv]
[bibtex]
@InProceedings{Kalinin_2025_ICCV, author = {Kalinin, Alexandr A. and Carpenter, Anne E. and Singh, Shantanu and O'Meara, Matthew J.}, title = {cubic: CUDA-accelerated 3D BioImage Computing}, booktitle = {Proceedings of the IEEE/CVF International Conference on Computer Vision (ICCV) Workshops}, month = {October}, year = {2025}, pages = {5772-5781} }