Computer Vision for Microscopy Image Analysis


Analyzing U-Net Robustness for Single Cell Nucleus Segmentation From Phase Contrast Images
Chenyi Ling,
Michael Majurski,
Michael Halter,
Jeffrey Stinson,
Anne Plant,
Joe Chalfoun
[pdf]
[bibtex]
@InProceedings{Ling_2020_CVPR_Workshops,
author = {Ling, Chenyi and Majurski, Michael and Halter, Michael and Stinson, Jeffrey and Plant, Anne and Chalfoun, Joe},
title = {Analyzing U-Net Robustness for Single Cell Nucleus Segmentation From Phase Contrast Images},
booktitle = {Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2020}
}

Celeganser: Automated Analysis of Nematode Morphology and Age
Linfeng Wang,
Shu Kong,
Zachary Pincus,
Charless Fowlkes
[pdf]
[bibtex]
@InProceedings{Wang_2020_CVPR_Workshops,
author = {Wang, Linfeng and Kong, Shu and Pincus, Zachary and Fowlkes, Charless},
title = {Celeganser: Automated Analysis of Nematode Morphology and Age},
booktitle = {Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2020}
}

Estimation of Orientation and Camera Parameters From Cryo-Electron Microscopy Images With Variational Autoencoders and Generative Adversarial Networks
Nina Miolane,
Frederic Poitevin,
Yee-Ting Li,
Susan Holmes
[pdf]
[bibtex]
@InProceedings{Miolane_2020_CVPR_Workshops,
author = {Miolane, Nina and Poitevin, Frederic and Li, Yee-Ting and Holmes, Susan},
title = {Estimation of Orientation and Camera Parameters From Cryo-Electron Microscopy Images With Variational Autoencoders and Generative Adversarial Networks},
booktitle = {Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2020}
}

WISH: Efficient 3D Biological Shape Classification Through Willmore Flow and Spherical Harmonics Decomposition
Marco Agus,
Enrico Gobbetti,
Giovanni Pintore,
Corrado Cali,
Jens Schneider
[pdf]
[bibtex]
@InProceedings{Agus_2020_CVPR_Workshops,
author = {Agus, Marco and Gobbetti, Enrico and Pintore, Giovanni and Cali, Corrado and Schneider, Jens},
title = {WISH: Efficient 3D Biological Shape Classification Through Willmore Flow and Spherical Harmonics Decomposition},
booktitle = {Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2020}
}

Feedback U-Net for Cell Image Segmentation
Eisuke Shibuya,
Kazuhiro Hotta
[pdf]
[bibtex]
@InProceedings{Shibuya_2020_CVPR_Workshops,
author = {Shibuya, Eisuke and Hotta, Kazuhiro},
title = {Feedback U-Net for Cell Image Segmentation},
booktitle = {Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2020}
}

Multi-Object Graph-Based Segmentation With Non-Overlapping Surfaces
Patrick M. Jensen,
Anders B. Dahl,
Vedrana A. Dahl
[pdf]
[bibtex]
@InProceedings{Jensen_2020_CVPR_Workshops,
author = {Jensen, Patrick M. and Dahl, Anders B. and Dahl, Vedrana A.},
title = {Multi-Object Graph-Based Segmentation With Non-Overlapping Surfaces},
booktitle = {Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2020}
}

Self-Supervised Feature Extraction for 3D Axon Segmentation
Tzofi Klinghoffer,
Peter Morales,
Young-Gyun Park,
Nicholas Evans,
Kwanghun Chung,
Laura J. Brattain
[pdf]
[bibtex]
@InProceedings{Klinghoffer_2020_CVPR_Workshops,
author = {Klinghoffer, Tzofi and Morales, Peter and Park, Young-Gyun and Evans, Nicholas and Chung, Kwanghun and Brattain, Laura J.},
title = {Self-Supervised Feature Extraction for 3D Axon Segmentation},
booktitle = {Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2020}
}

Detection and Classification of Pollen Grain Microscope Images
Sebastiano Battiato,
Alessandro Ortis,
Francesca Trenta,
Lorenzo Ascari,
Mara Politi,
Consolata Siniscalco
[pdf]
[bibtex]
@InProceedings{Battiato_2020_CVPR_Workshops,
author = {Battiato, Sebastiano and Ortis, Alessandro and Trenta, Francesca and Ascari, Lorenzo and Politi, Mara and Siniscalco, Consolata},
title = {Detection and Classification of Pollen Grain Microscope Images},
booktitle = {Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2020}
}

CTMC: Cell Tracking With Mitosis Detection Dataset Challenge
Samreen Anjum,
Danna Gurari
[pdf]
[bibtex]
@InProceedings{Anjum_2020_CVPR_Workshops,
author = {Anjum, Samreen and Gurari, Danna},
title = {CTMC: Cell Tracking With Mitosis Detection Dataset Challenge},
booktitle = {Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2020}
}

A Web-Based Intelligence Platform for Diagnosis of Malaria in Thick Blood Smear Images: A Case for a Developing Country
Rose Nakasi,
Jeremy Francis Tusubira,
Aminah Zawedde,
Ali Mansourian,
Ernest Mwebaze
[pdf] [supp]
[bibtex]
@InProceedings{Nakasi_2020_CVPR_Workshops,
author = {Nakasi, Rose and Tusubira, Jeremy Francis and Zawedde, Aminah and Mansourian, Ali and Mwebaze, Ernest},
title = {A Web-Based Intelligence Platform for Diagnosis of Malaria in Thick Blood Smear Images: A Case for a Developing Country},
booktitle = {Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2020}
}

A Topological Nomenclature for 3D Shape Analysis in Connectomics
Abhimanyu Talwar,
Zudi Lin,
Donglai Wei,
Yuesong Wu,
Bowen Zheng,
Jinglin Zhao,
Won-Dong Jang,
Xueying Wang,
Jeff Lichtman,
Hanspeter Pfister
[pdf]
[bibtex]
@InProceedings{Talwar_2020_CVPR_Workshops,
author = {Talwar, Abhimanyu and Lin, Zudi and Wei, Donglai and Wu, Yuesong and Zheng, Bowen and Zhao, Jinglin and Jang, Won-Dong and Wang, Xueying and Lichtman, Jeff and Pfister, Hanspeter},
title = {A Topological Nomenclature for 3D Shape Analysis in Connectomics},
booktitle = {Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2020}
}

Representation Learning of Histopathology Images Using Graph Neural Networks
Mohammed Adnan,
Shivam Kalra,
Hamid R. Tizhoosh
[pdf]
[bibtex]
@InProceedings{Adnan_2020_CVPR_Workshops,
author = {Adnan, Mohammed and Kalra, Shivam and Tizhoosh, Hamid R.},
title = {Representation Learning of Histopathology Images Using Graph Neural Networks},
booktitle = {Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2020}
}

A Topological Encoding Convolutional Neural Network for Segmentation of 3D Multiphoton Images of Brain Vasculature Using Persistent Homology
Mohammad Haft-Javaherian,
Martin Villiger,
Chris B. Schaffer,
Nozomi Nishimura,
Polina Golland,
Brett E. Bouma
[pdf]
[bibtex]
@InProceedings{Haft-Javaherian_2020_CVPR_Workshops,
author = {Haft-Javaherian, Mohammad and Villiger, Martin and Schaffer, Chris B. and Nishimura, Nozomi and Golland, Polina and Bouma, Brett E.},
title = {A Topological Encoding Convolutional Neural Network for Segmentation of 3D Multiphoton Images of Brain Vasculature Using Persistent Homology},
booktitle = {Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2020}
}

Rapid Training Data Creation by Synthesizing Medical Images for Classification and Localization
Abhishek Kushwaha,
Sarthak Gupta,
Anish Bhanushali,
Tathagato Rai Dastidar
[pdf]
[bibtex]
@InProceedings{Kushwaha_2020_CVPR_Workshops,
author = {Kushwaha, Abhishek and Gupta, Sarthak and Bhanushali, Anish and Dastidar, Tathagato Rai},
title = {Rapid Training Data Creation by Synthesizing Medical Images for Classification and Localization},
booktitle = {Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2020}
}

Content-Based Propagation of User Markings for Interactive Segmentation of Patterned Images
Vedrana A. Dahl,
Monica J. Emerson,
Camilla H. Trinderup,
Anders B. Dahl
[pdf]
[bibtex]
@InProceedings{Dahl_2020_CVPR_Workshops,
author = {Dahl, Vedrana A. and Emerson, Monica J. and Trinderup, Camilla H. and Dahl, Anders B.},
title = {Content-Based Propagation of User Markings for Interactive Segmentation of Patterned Images},
booktitle = {Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2020}
}