Computer Vision for Microscopy Image Analysis

Analyzing U-Net Robustness for Single Cell Nucleus Segmentation From Phase Contrast Images

Chenyi Ling,

Michael Majurski,

Michael Halter,

Jeffrey Stinson,

Anne Plant,

Joe Chalfoun

[pdf] [video]

[bibtex]

@InProceedings{Ling_2020_CVPR_Workshops,
author = {Ling, Chenyi and Majurski, Michael and Halter, Michael and Stinson, Jeffrey and Plant, Anne and Chalfoun, Joe},
title = {Analyzing U-Net Robustness for Single Cell Nucleus Segmentation From Phase Contrast Images},
booktitle = {Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2020}
}

Celeganser: Automated Analysis of Nematode Morphology and Age

Linfeng Wang,

Shu Kong,

Zachary Pincus,

Charless Fowlkes

[pdf] [arXiv]

[bibtex]

@InProceedings{Wang_2020_CVPR_Workshops,
author = {Wang, Linfeng and Kong, Shu and Pincus, Zachary and Fowlkes, Charless},
title = {Celeganser: Automated Analysis of Nematode Morphology and Age},
booktitle = {Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2020}
}

Estimation of Orientation and Camera Parameters From Cryo-Electron Microscopy Images With Variational Autoencoders and Generative Adversarial Networks

Nina Miolane,

Frederic Poitevin,

Yee-Ting Li,

Susan Holmes

[pdf] [arXiv]

[bibtex]

@InProceedings{Miolane_2020_CVPR_Workshops,
author = {Miolane, Nina and Poitevin, Frederic and Li, Yee-Ting and Holmes, Susan},
title = {Estimation of Orientation and Camera Parameters From Cryo-Electron Microscopy Images With Variational Autoencoders and Generative Adversarial Networks},
booktitle = {Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2020}
}

WISH: Efficient 3D Biological Shape Classification Through Willmore Flow and Spherical Harmonics Decomposition

Marco Agus,

Enrico Gobbetti,

Giovanni Pintore,

Corrado Cali,

Jens Schneider

[pdf] [video]

[bibtex]

@InProceedings{Agus_2020_CVPR_Workshops,
author = {Agus, Marco and Gobbetti, Enrico and Pintore, Giovanni and Cali, Corrado and Schneider, Jens},
title = {WISH: Efficient 3D Biological Shape Classification Through Willmore Flow and Spherical Harmonics Decomposition},
booktitle = {Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2020}
}

Feedback U-Net for Cell Image Segmentation

Eisuke Shibuya,

Kazuhiro Hotta

[pdf]

[bibtex]

@InProceedings{Shibuya_2020_CVPR_Workshops,
author = {Shibuya, Eisuke and Hotta, Kazuhiro},
title = {Feedback U-Net for Cell Image Segmentation},
booktitle = {Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2020}
}

Multi-Object Graph-Based Segmentation With Non-Overlapping Surfaces

Patrick M. Jensen,

Anders B. Dahl,

Vedrana A. Dahl

[pdf]

[bibtex]

@InProceedings{Jensen_2020_CVPR_Workshops,
author = {Jensen, Patrick M. and Dahl, Anders B. and Dahl, Vedrana A.},
title = {Multi-Object Graph-Based Segmentation With Non-Overlapping Surfaces},
booktitle = {Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2020}
}

Self-Supervised Feature Extraction for 3D Axon Segmentation

Tzofi Klinghoffer,

Peter Morales,

Young-Gyun Park,

Nicholas Evans,

Kwanghun Chung,

Laura J. Brattain

[pdf] [arXiv]

[bibtex]

@InProceedings{Klinghoffer_2020_CVPR_Workshops,
author = {Klinghoffer, Tzofi and Morales, Peter and Park, Young-Gyun and Evans, Nicholas and Chung, Kwanghun and Brattain, Laura J.},
title = {Self-Supervised Feature Extraction for 3D Axon Segmentation},
booktitle = {Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2020}
}

Detection and Classification of Pollen Grain Microscope Images

Sebastiano Battiato,

Alessandro Ortis,

Francesca Trenta,

Lorenzo Ascari,

Mara Politi,

Consolata Siniscalco

[pdf]

[bibtex]

@InProceedings{Battiato_2020_CVPR_Workshops,
author = {Battiato, Sebastiano and Ortis, Alessandro and Trenta, Francesca and Ascari, Lorenzo and Politi, Mara and Siniscalco, Consolata},
title = {Detection and Classification of Pollen Grain Microscope Images},
booktitle = {Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2020}
}

CTMC: Cell Tracking With Mitosis Detection Dataset Challenge

Samreen Anjum,

Danna Gurari

[pdf]

[bibtex]

@InProceedings{Anjum_2020_CVPR_Workshops,
author = {Anjum, Samreen and Gurari, Danna},
title = {CTMC: Cell Tracking With Mitosis Detection Dataset Challenge},
booktitle = {Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2020}
}

A Web-Based Intelligence Platform for Diagnosis of Malaria in Thick Blood Smear Images: A Case for a Developing Country

Rose Nakasi,

Jeremy Francis Tusubira,

Aminah Zawedde,

Ali Mansourian,

Ernest Mwebaze

[pdf] [supp] [video]

[bibtex]

@InProceedings{Nakasi_2020_CVPR_Workshops,
author = {Nakasi, Rose and Tusubira, Jeremy Francis and Zawedde, Aminah and Mansourian, Ali and Mwebaze, Ernest},
title = {A Web-Based Intelligence Platform for Diagnosis of Malaria in Thick Blood Smear Images: A Case for a Developing Country},
booktitle = {Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2020}
}

A Topological Nomenclature for 3D Shape Analysis in Connectomics

Abhimanyu Talwar,

Zudi Lin,

Donglai Wei,

Yuesong Wu,

Bowen Zheng,

Jinglin Zhao,

Won-Dong Jang,

Xueying Wang,

Jeff Lichtman,

Hanspeter Pfister

[pdf] [arXiv]

[bibtex]

@InProceedings{Talwar_2020_CVPR_Workshops,
author = {Talwar, Abhimanyu and Lin, Zudi and Wei, Donglai and Wu, Yuesong and Zheng, Bowen and Zhao, Jinglin and Jang, Won-Dong and Wang, Xueying and Lichtman, Jeff and Pfister, Hanspeter},
title = {A Topological Nomenclature for 3D Shape Analysis in Connectomics},
booktitle = {Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2020}
}

Representation Learning of Histopathology Images Using Graph Neural Networks

Mohammed Adnan,

Shivam Kalra,

Hamid R. Tizhoosh

[pdf] [arXiv]

[bibtex]

@InProceedings{Adnan_2020_CVPR_Workshops,
author = {Adnan, Mohammed and Kalra, Shivam and Tizhoosh, Hamid R.},
title = {Representation Learning of Histopathology Images Using Graph Neural Networks},
booktitle = {Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2020}
}

A Topological Encoding Convolutional Neural Network for Segmentation of 3D Multiphoton Images of Brain Vasculature Using Persistent Homology

Mohammad Haft-Javaherian,

Martin Villiger,

Chris B. Schaffer,

Nozomi Nishimura,

Polina Golland,

Brett E. Bouma

[pdf] [video]

[bibtex]

@InProceedings{Haft-Javaherian_2020_CVPR_Workshops,
author = {Haft-Javaherian, Mohammad and Villiger, Martin and Schaffer, Chris B. and Nishimura, Nozomi and Golland, Polina and Bouma, Brett E.},
title = {A Topological Encoding Convolutional Neural Network for Segmentation of 3D Multiphoton Images of Brain Vasculature Using Persistent Homology},
booktitle = {Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2020}
}

Rapid Training Data Creation by Synthesizing Medical Images for Classification and Localization

Abhishek Kushwaha,

Sarthak Gupta,

Anish Bhanushali,

Tathagato Rai Dastidar

[pdf] [video]

[bibtex]

@InProceedings{Kushwaha_2020_CVPR_Workshops,
author = {Kushwaha, Abhishek and Gupta, Sarthak and Bhanushali, Anish and Dastidar, Tathagato Rai},
title = {Rapid Training Data Creation by Synthesizing Medical Images for Classification and Localization},
booktitle = {Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2020}
}

Content-Based Propagation of User Markings for Interactive Segmentation of Patterned Images

Vedrana A. Dahl,

Monica J. Emerson,

Camilla H. Trinderup,

Anders B. Dahl

[pdf] [arXiv] [video]

[bibtex]

@InProceedings{Dahl_2020_CVPR_Workshops,
author = {Dahl, Vedrana A. and Emerson, Monica J. and Trinderup, Camilla H. and Dahl, Anders B.},
title = {Content-Based Propagation of User Markings for Interactive Segmentation of Patterned Images},
booktitle = {Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Workshops},
month = {June},
year = {2020}
}