Computational Challenges in Digital Pathology


A QuadTree Image Representation for Computational Pathology
Robert Jewsbury,
Abhir Bhalerao,
Nasir M. Rajpoot
[pdf] [arXiv]
[bibtex]
@InProceedings{Jewsbury_2021_ICCV, author = {Jewsbury, Robert and Bhalerao, Abhir and Rajpoot, Nasir M.}, title = {A QuadTree Image Representation for Computational Pathology}, booktitle = {Proceedings of the IEEE/CVF International Conference on Computer Vision (ICCV) Workshops}, month = {October}, year = {2021}, pages = {648-656} }

Probeable DARTS With Application to Computational Pathology
Sheyang Tang,
Mahdi S. Hosseini,
Lina Chen,
Sonal Varma,
Corwyn Rowsell,
Savvas Damaskinos,
Konstantinos N. Plataniotis,
Zhou Wang
[pdf] [supp] [arXiv]
[bibtex]
@InProceedings{Tang_2021_ICCV, author = {Tang, Sheyang and Hosseini, Mahdi S. and Chen, Lina and Varma, Sonal and Rowsell, Corwyn and Damaskinos, Savvas and Plataniotis, Konstantinos N. and Wang, Zhou}, title = {Probeable DARTS With Application to Computational Pathology}, booktitle = {Proceedings of the IEEE/CVF International Conference on Computer Vision (ICCV) Workshops}, month = {October}, year = {2021}, pages = {572-581} }

ALBRT: Cellular Composition Prediction in Routine Histology Images
Muhammad Dawood,
Kim Branson,
Nasir M. Rajpoot,
Fayyaz Minhas
[pdf] [arXiv]
[bibtex]
@InProceedings{Dawood_2021_ICCV, author = {Dawood, Muhammad and Branson, Kim and Rajpoot, Nasir M. and Minhas, Fayyaz}, title = {ALBRT: Cellular Composition Prediction in Routine Histology Images}, booktitle = {Proceedings of the IEEE/CVF International Conference on Computer Vision (ICCV) Workshops}, month = {October}, year = {2021}, pages = {664-673} }

Self-Supervised Representation Learning Using Visual Field Expansion on Digital Pathology
Joseph Boyd,
Mykola Liashuha,
Eric Deutsch,
Nikos Paragios,
Stergios Christodoulidis,
Maria Vakalopoulou
[pdf] [supp] [arXiv]
[bibtex]
@InProceedings{Boyd_2021_ICCV, author = {Boyd, Joseph and Liashuha, Mykola and Deutsch, Eric and Paragios, Nikos and Christodoulidis, Stergios and Vakalopoulou, Maria}, title = {Self-Supervised Representation Learning Using Visual Field Expansion on Digital Pathology}, booktitle = {Proceedings of the IEEE/CVF International Conference on Computer Vision (ICCV) Workshops}, month = {October}, year = {2021}, pages = {639-647} }

Iterative Cross-Scanner Registration for Whole Slide Images
Luisa Theelke,
Frauke Wilm,
Christian Marzahl,
Christof A. Bertram,
Robert Klopfleisch,
Andreas Maier,
Marc Aubreville,
Katharina Breininger
[pdf]
[bibtex]
@InProceedings{Theelke_2021_ICCV, author = {Theelke, Luisa and Wilm, Frauke and Marzahl, Christian and Bertram, Christof A. and Klopfleisch, Robert and Maier, Andreas and Aubreville, Marc and Breininger, Katharina}, title = {Iterative Cross-Scanner Registration for Whole Slide Images}, booktitle = {Proceedings of the IEEE/CVF International Conference on Computer Vision (ICCV) Workshops}, month = {October}, year = {2021}, pages = {582-590} }

Joint Semi-Supervised and Active Learning for Segmentation of Gigapixel Pathology Images With Cost-Effective Labeling
Zhengfeng Lai,
Chao Wang,
Luca Cerny Oliveira,
Brittany N. Dugger,
Sen-Ching Cheung,
Chen-Nee Chuah
[pdf]
[bibtex]
@InProceedings{Lai_2021_ICCV, author = {Lai, Zhengfeng and Wang, Chao and Oliveira, Luca Cerny and Dugger, Brittany N. and Cheung, Sen-Ching and Chuah, Chen-Nee}, title = {Joint Semi-Supervised and Active Learning for Segmentation of Gigapixel Pathology Images With Cost-Effective Labeling}, booktitle = {Proceedings of the IEEE/CVF International Conference on Computer Vision (ICCV) Workshops}, month = {October}, year = {2021}, pages = {591-600} }

Simultaneous Nuclear Instance and Layer Segmentation in Oral Epithelial Dysplasia
Adam J. Shephard,
Simon Graham,
Saad Bashir,
Mostafa Jahanifar,
Hanya Mahmood,
Ali Khurram,
Nasir M. Rajpoot
[pdf] [arXiv]
[bibtex]
@InProceedings{Shephard_2021_ICCV, author = {Shephard, Adam J. and Graham, Simon and Bashir, Saad and Jahanifar, Mostafa and Mahmood, Hanya and Khurram, Ali and Rajpoot, Nasir M.}, title = {Simultaneous Nuclear Instance and Layer Segmentation in Oral Epithelial Dysplasia}, booktitle = {Proceedings of the IEEE/CVF International Conference on Computer Vision (ICCV) Workshops}, month = {October}, year = {2021}, pages = {552-561} }

Guided Representation Learning for the Classification of Hematopoietic Cells
Philipp Grabel,
Martina Crysandt,
Barbara M. Klinkhammer,
Peter Boor,
Tim H. Brummendorf,
Dorit Merhof
[pdf]
[bibtex]
@InProceedings{Grabel_2021_ICCV, author = {Grabel, Philipp and Crysandt, Martina and Klinkhammer, Barbara M. and Boor, Peter and Brummendorf, Tim H. and Merhof, Dorit}, title = {Guided Representation Learning for the Classification of Hematopoietic Cells}, booktitle = {Proceedings of the IEEE/CVF International Conference on Computer Vision (ICCV) Workshops}, month = {October}, year = {2021}, pages = {545-551} }

Improving Self-Supervised Learning With Hardness-Aware Dynamic Curriculum Learning: An Application to Digital Pathology
Chetan L. Srinidhi,
Anne L. Martel
[pdf] [arXiv]
[bibtex]
@InProceedings{Srinidhi_2021_ICCV, author = {Srinidhi, Chetan L. and Martel, Anne L.}, title = {Improving Self-Supervised Learning With Hardness-Aware Dynamic Curriculum Learning: An Application to Digital Pathology}, booktitle = {Proceedings of the IEEE/CVF International Conference on Computer Vision (ICCV) Workshops}, month = {October}, year = {2021}, pages = {562-571} }

An Investigation of Attention Mechanisms in Histopathology Whole-Slide-Image Analysis for Regression Objectives
Philippe Weitz,
Yinxi Wang,
Johan Hartman,
Mattias Rantalainen
[pdf]
[bibtex]
@InProceedings{Weitz_2021_ICCV, author = {Weitz, Philippe and Wang, Yinxi and Hartman, Johan and Rantalainen, Mattias}, title = {An Investigation of Attention Mechanisms in Histopathology Whole-Slide-Image Analysis for Regression Objectives}, booktitle = {Proceedings of the IEEE/CVF International Conference on Computer Vision (ICCV) Workshops}, month = {October}, year = {2021}, pages = {611-619} }

Lizard: A Large-Scale Dataset for Colonic Nuclear Instance Segmentation and Classification
Simon Graham,
Mostafa Jahanifar,
Ayesha Azam,
Mohammed Nimir,
Yee-Wah Tsang,
Katherine Dodd,
Emily Hero,
Harvir Sahota,
Atisha Tank,
Ksenija Benes,
Noorul Wahab,
Fayyaz Minhas,
Shan E. Ahmed Raza,
Hesham El Daly,
Kishore Gopalakrishnan,
David Snead,
Nasir M. Rajpoot
[pdf] [arXiv]
[bibtex]
@InProceedings{Graham_2021_ICCV, author = {Graham, Simon and Jahanifar, Mostafa and Azam, Ayesha and Nimir, Mohammed and Tsang, Yee-Wah and Dodd, Katherine and Hero, Emily and Sahota, Harvir and Tank, Atisha and Benes, Ksenija and Wahab, Noorul and Minhas, Fayyaz and Raza, Shan E. Ahmed and El Daly, Hesham and Gopalakrishnan, Kishore and Snead, David and Rajpoot, Nasir M.}, title = {Lizard: A Large-Scale Dataset for Colonic Nuclear Instance Segmentation and Classification}, booktitle = {Proceedings of the IEEE/CVF International Conference on Computer Vision (ICCV) Workshops}, month = {October}, year = {2021}, pages = {684-693} }

H&E-Adversarial Network: A Convolutional Neural Network To Learn Stain-Invariant Features Through Hematoxylin & Eosin Regression
Niccolo Marini,
Manfredo Atzori,
Sebastian Otalora,
Stephane Marchand-Maillet,
Henning Muller
[pdf]
[bibtex]
@InProceedings{Marini_2021_ICCV, author = {Marini, Niccolo and Atzori, Manfredo and Otalora, Sebastian and Marchand-Maillet, Stephane and Muller, Henning}, title = {H&E-Adversarial Network: A Convolutional Neural Network To Learn Stain-Invariant Features Through Hematoxylin & Eosin Regression}, booktitle = {Proceedings of the IEEE/CVF International Conference on Computer Vision (ICCV) Workshops}, month = {October}, year = {2021}, pages = {601-610} }

Deep Ordinal Focus Assessment for Whole Slide Images
Tome Albuquerque,
Ana Moreira,
Jaime S. Cardoso
[pdf]
[bibtex]
@InProceedings{Albuquerque_2021_ICCV, author = {Albuquerque, Tome and Moreira, Ana and Cardoso, Jaime S.}, title = {Deep Ordinal Focus Assessment for Whole Slide Images}, booktitle = {Proceedings of the IEEE/CVF International Conference on Computer Vision (ICCV) Workshops}, month = {October}, year = {2021}, pages = {657-663} }

Multi-Prototype Few-Shot Learning in Histopathology
Jessica Deuschel,
Daniel Firmbach,
Carol I. Geppert,
Markus Eckstein,
Arndt Hartmann,
Volker Bruns,
Petr Kuritcyn,
Jakob Dexl,
David Hartmann,
Dominik Perrin,
Thomas Wittenberg,
Michaela Benz
[pdf]
[bibtex]
@InProceedings{Deuschel_2021_ICCV, author = {Deuschel, Jessica and Firmbach, Daniel and Geppert, Carol I. and Eckstein, Markus and Hartmann, Arndt and Bruns, Volker and Kuritcyn, Petr and Dexl, Jakob and Hartmann, David and Perrin, Dominik and Wittenberg, Thomas and Benz, Michaela}, title = {Multi-Prototype Few-Shot Learning in Histopathology}, booktitle = {Proceedings of the IEEE/CVF International Conference on Computer Vision (ICCV) Workshops}, month = {October}, year = {2021}, pages = {620-628} }

A Pathology Deep Learning System Capable of Triage of Melanoma Specimens Utilizing Dermatopathologist Consensus As Ground Truth
Sivaramakrishnan Sankarapandian,
Saul Kohn,
Vaughn Spurrier,
Sean Grullon,
Rajath E. Soans,
Kameswari D. Ayyagari,
Ramachandra V. Chamarthi,
Kiran Motaparthi,
Jason B. Lee,
Wonwoo Shon,
Michael Bonham,
Julianna D. Ianni
[pdf] [arXiv]
[bibtex]
@InProceedings{Sankarapandian_2021_ICCV, author = {Sankarapandian, Sivaramakrishnan and Kohn, Saul and Spurrier, Vaughn and Grullon, Sean and Soans, Rajath E. and Ayyagari, Kameswari D. and Chamarthi, Ramachandra V. and Motaparthi, Kiran and Lee, Jason B. and Shon, Wonwoo and Bonham, Michael and Ianni, Julianna D.}, title = {A Pathology Deep Learning System Capable of Triage of Melanoma Specimens Utilizing Dermatopathologist Consensus As Ground Truth}, booktitle = {Proceedings of the IEEE/CVF International Conference on Computer Vision (ICCV) Workshops}, month = {October}, year = {2021}, pages = {629-638} }

Real-Time Cell Counting in Unlabeled Microscopy Images
Yuang Zhu,
Zhao Chen,
Yuxin Zheng,
Qinghua Zhang,
Xuan Wang
[pdf]
[bibtex]
@InProceedings{Zhu_2021_ICCV, author = {Zhu, Yuang and Chen, Zhao and Zheng, Yuxin and Zhang, Qinghua and Wang, Xuan}, title = {Real-Time Cell Counting in Unlabeled Microscopy Images}, booktitle = {Proceedings of the IEEE/CVF International Conference on Computer Vision (ICCV) Workshops}, month = {October}, year = {2021}, pages = {694-703} }

Robust Interactive Semantic Segmentation of Pathology Images With Minimal User Input
Mostafa Jahanifar,
Neda Zamani Tajeddin,
Navid Alemi Koohbanani,
Nasir M. Rajpoot
[pdf] [arXiv]
[bibtex]
@InProceedings{Jahanifar_2021_ICCV, author = {Jahanifar, Mostafa and Tajeddin, Neda Zamani and Koohbanani, Navid Alemi and Rajpoot, Nasir M.}, title = {Robust Interactive Semantic Segmentation of Pathology Images With Minimal User Input}, booktitle = {Proceedings of the IEEE/CVF International Conference on Computer Vision (ICCV) Workshops}, month = {October}, year = {2021}, pages = {674-683} }